4BLB | pdb_00004blb

Crystal structure of a human Suppressor of fused (SUFU)-GLI1p complex


Experimental Data Snapshot

  • Method:&nbspX-RAY DIFFRACTION
  • Resolution:&nbsp2.80 Å
  • R-Value Free:&nbsp
    0.234 (Depositor), 0.240 (DCC)&nbsp
  • R-Value Work:&nbsp
    0.197 (Depositor), 0.200 (DCC)&nbsp
  • R-Value Observed:&nbsp
    0.198&nbsp(Depositor)&nbsp

wwPDB Validation&nbsp &nbsp3D Report&nbspFull Report


This is version 2.1 of the entry. See complete&nbsphistory.&nbsp


Literature

Structural Basis of Sufu-GLI Interaction in Hedgehog Signalling Regulation

Cherry, A.L.,&nbspFinta, C.,&nbspKarlstrom, M.,&nbspJin, Q.,&nbspSchwend, T.,&nbspAstorga-Wells, J.,&nbspZubarev, R.A.,&nbspDel Campo, M.,&nbspCriswell, A.R.,&nbspDe Sanctis, D.,&nbspJovine, L.,&nbspToftgard, R.

(2013) Acta Crystallogr D Biol Crystallogr&nbsp69: 2579

  • DOI:&nbsphttps://doi.org/10.1107/S0907444913028473
  • Primary Citation of Related Structures: &nbsp
    4BL8, 4BL9, 4BLA, 4BLB, 4BLD

  • PubMed Abstract:&nbsp

    Hedgehog signalling plays a fundamental role in the control of metazoan development, cell proliferation and differentiation, as highlighted by the fact that its deregulation is associated with the development of many human tumours. SUFU is an essential intracellular negative regulator of mammalian Hedgehog signalling and acts by binding and modulating the activity of GLI transcription factors. Despite its central importance, little is known about SUFU regulation and the nature of SUFU-GLI interaction. Here, the crystal and small-angle X-ray scattering structures of full-length human SUFU and its complex with the key SYGHL motif conserved in all GLIs are reported. It is demonstrated that GLI binding is associated with major conformational changes in SUFU, including an intrinsically disordered loop that is also crucial for pathway activation. These findings reveal the structure of the SUFU-GLI interface and suggest a mechanism for an essential regulatory step in Hedgehog signalling, offering possibilities for the development of novel pathway modulators and therapeutics.


  • Organizational Affiliation:&nbsp

    Department of Biosciences and Nutrition and Center for Biosciences, Karolinska Institutet, Novum, Hälsovägen 7, SE-141 83 Huddinge, Sweden.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
MALTOSE-BINDING PERIPLASMIC PROTEIN, SUPPRESSOR OF FUSED HOMOLOG
A, B, C, D
753Escherichia coli BL21(DE3),&nbspHomo sapiensMutation(s): 12&nbsp
UniProt & NIH Common Fund Data Resources
Find proteins for&nbspP0AEX9&nbsp(Escherichia coli (strain K12))
Explore&nbspP0AEX9&nbsp
Go to UniProtKB: &nbspP0AEX9
Find proteins for&nbspQ9UMX1&nbsp(Homo sapiens)
Explore&nbspQ9UMX1&nbsp
Go to UniProtKB: &nbspQ9UMX1
PHAROS: &nbspQ9UMX1
GTEx: &nbspENSG00000107882&nbsp
Entity Groups &nbsp
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupsP0AEX9Q9UMX1
Sequence Annotations
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  • Reference Sequence

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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
ZINC FINGER PROTEIN GLI1
E, F, G, H
17Homo sapiensMutation(s): 0&nbsp
UniProt & NIH Common Fund Data Resources
Find proteins for&nbspP08151&nbsp(Homo sapiens)
Explore&nbspP08151&nbsp
Go to UniProtKB: &nbspP08151
PHAROS: &nbspP08151
GTEx: &nbspENSG00000111087&nbsp
Entity Groups &nbsp
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP08151
Sequence Annotations
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  • Reference Sequence
Oligosaccharides

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Entity ID: 3
MoleculeChains Length2D Diagram Glycosylation3D Interactions
alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose
I, J, K, L
2N/A
Glycosylation Resources
GlyTouCan: &nbspG07411ON
GlyCosmos: &nbspG07411ON
Biologically Interesting Molecules (External Reference)&nbsp1 Unique
Experimental Data & Validation

Experimental Data

  • Method:&nbspX-RAY DIFFRACTION
  • Resolution:&nbsp2.80 Å
  • R-Value Free:&nbsp 0.234 (Depositor), 0.240 (DCC)&nbsp
  • R-Value Work:&nbsp 0.197 (Depositor), 0.200 (DCC)&nbsp
  • R-Value Observed:&nbsp0.198&nbsp(Depositor)&nbsp
Space Group:&nbspP 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 116.3α = 90
b = 137.6β = 105.49
c = 116.54γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
xia2data reduction
xia2data scaling
Aimlessdata scaling
PHASERphasing

Structure Validation

View&nbspFull Validation Report



Entry History&nbsp

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2013-11-27
    Type: Initial release
  • Version 1.1: 2013-12-11
    Changes: Atomic model, Database references, Derived calculations, Other, Refinement description, Source and taxonomy, Structure summary
  • Version 1.2: 2013-12-18
    Changes: Database references
  • Version 1.3: 2017-03-15
    Changes: Source and taxonomy
  • Version 1.4: 2019-05-08
    Changes: Data collection, Experimental preparation
  • Version 1.5: 2019-05-15
    Changes: Data collection, Experimental preparation
  • Version 2.0: 2020-07-29
    Type: Remediation
    Reason: Carbohydrate remediation
    Changes: Atomic model, Data collection, Derived calculations, Non-polymer description, Other, Structure summary
  • Version 2.1: 2024-05-08
    Changes: Data collection, Database references, Structure summary