4A64 | pdb_00004a64

Crystal structure of the N-terminal domain of human Cul4B at 2.57A resolution

PDB DOI:&nbsphttps://doi.org/10.2210/pdb4A64/pdb

Classification:&nbspCELL CYCLE
Organism(s):&nbspHomo sapiens
Expression System:&nbspEscherichia coli BL21(DE3)
Mutation(s):&nbspYes&nbsp

Deposited:&nbsp2011-10-31&nbspReleased:&nbsp2012-02-29&nbsp
Deposition Author(s):&nbspVollmar, M., Ayinampudi, V., Cooper, C., Guo, K., Krojer, T., Muniz, J.R.C., von Delft, F., Weigelt, J., Arrowsmith, C.H., Bountra, C., Edwards, A., Bullock, A.

Experimental Data Snapshot

Method:&nbspX-RAY DIFFRACTION
Resolution:&nbsp2.57 Å
R-Value Free:&nbsp
0.230 (Depositor), 0.230 (DCC)&nbsp
R-Value Work:&nbsp
0.184 (Depositor), 0.190 (DCC)&nbsp
R-Value Observed:&nbsp
0.187&nbsp(Depositor)&nbsp

Starting Models: experimental
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wwPDB Validation&nbsp 3D Report&nbspFull Report

This is version 1.2 of the entry. See complete&nbsphistory.&nbsp

Literature

Crystal Structure of the N-Terminal Domain of Human Cul4B at 2.57A Resolution

Vollmar, M.,&nbspAyinampudi, V.,&nbspCooper, C.,&nbspGuo, K.,&nbspKrojer, T.,&nbspMuniz, J.R.C.,&nbspvon Delft, F.,&nbspWeigelt, J.,&nbspArrowsmith, C.H.,&nbspBountra, C.,&nbspEdwards, A.,&nbspBullock, A.

To be published.

Macromolecule Content

Total Structure Weight: 168.24 kDa&nbsp
Atom Count: 11,395&nbsp
Modelled Residue Count: 1,346&nbsp
Deposited Residue Count: 1,416&nbsp
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
CULLIN-4B	A, B, C, D	354	Homo sapiens	Mutation(s): 2&nbsp
UniProt & NIH Common Fund Data Resources
Find proteins for&nbspQ13620&nbsp(Homo sapiens) Explore&nbspQ13620&nbsp Go to UniProtKB: &nbspQ13620
PHAROS: &nbspQ13620 GTEx: &nbspENSG00000158290&nbsp
Entity Groups &nbsp
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q13620
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands&nbsp1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
EDO Query on EDO Download Ideal Coordinates CCD File&nbsp SDF format, chain F [auth A] SDF format, chain J [auth C] SDF format, chain E [auth A] SDF format, chain G [auth A] SDF format, chain H [auth A] SDF format, chain I [auth B] SDF format, chain K [auth D] MOL2 format, chain F [auth A] MOL2 format, chain J [auth C] MOL2 format, chain E [auth A] MOL2 format, chain G [auth A] MOL2 format, chain H [auth A] MOL2 format, chain I [auth B] MOL2 format, chain K [auth D] mmCIF format, chain F [auth A] mmCIF format, chain J [auth C] mmCIF format, chain E [auth A] mmCIF format, chain G [auth A] mmCIF format, chain H [auth A] mmCIF format, chain I [auth B] mmCIF format, chain K [auth D]	E [auth A] F [auth A] G [auth A] H [auth A] I [auth B] E [auth A], F [auth A], G [auth A], H [auth A], I [auth B], J [auth C], K [auth D]	1,2-ETHANEDIOL C₂ H₆ O₂ LYCAIKOWRPUZTN-UHFFFAOYSA-N		Interactions Focus chain E [auth A] Focus chain F [auth A] Focus chain G [auth A] Focus chain H [auth A] Focus chain I [auth B] Focus chain J [auth C] Focus chain K [auth D] Interactions & Density Focus chain E [auth A] Focus chain F [auth A] Focus chain G [auth A] Focus chain H [auth A] Focus chain I [auth B] Focus chain J [auth C] Focus chain K [auth D]

Experimental Data & Validation

Experimental Data

Method:&nbspX-RAY DIFFRACTION
Resolution:&nbsp2.57 Å
R-Value Free:&nbsp 0.230 (Depositor), 0.230 (DCC)&nbsp
R-Value Work:&nbsp 0.184 (Depositor), 0.190 (DCC)&nbsp
R-Value Observed:&nbsp0.187&nbsp(Depositor)&nbsp

Space Group:&nbspP 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 64.248	α = 90
b = 157.091	β = 95.71
c = 92.916	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
XDS	data reduction
SCALA	data scaling
PHASER	phasing

Structure Validation

View&nbspFull Validation Report

Entry History&nbsp

Deposition Data

Released Date:&nbsp2012-02-29&nbsp

Deposition Author(s):&nbsp

Revision History (Full details and data files)

Version 1.0: 2012-02-29
Type: Initial release
Version 1.1: 2018-01-24
Changes: Database references
Version 1.2: 2023-12-20
Changes: Data collection, Database references, Derived calculations, Other, Refinement description

Prepare Data

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Deposit Data

Help and Resources

.id_divider{ color: #ccc; padding: 0 10px 0 10px; } .extended_id_info{ color: #ccc; font-size: 18px; position: relative; top: -10px; left: 4px; } 4A64 | pdb_00004a64

Crystal structure of the N-terminal domain of human Cul4B at 2.57A resolution

Crystal Structure of the N-Terminal Domain of Human Cul4B at 2.57A Resolution

Entity ID: 1

UniProt & NIH Common Fund Data Resources

Entity Groups &nbsp

Sequence Annotations

Expand

Experimental Data

Structure Validation

Deposition Data

Revision History (Full details and data files)

4A64 | pdb_00004a64