 Download MendeleyCrystal structure of putative TetR transcriptional regulator (YP_510936.1) from Jannaschia sp. CCS1 at 1.79 A resolution
Joint Center for Structural Genomics (JCSG)To be published.
3CJD | pdb_00003cjd
Crystal structure of putative TetR transcriptional regulator (YP_510936.1) from Jannaschia sp. CCS1 at 1.79 A resolution
- PDB DOI: https://doi.org/10.2210/pdb3CJD/pdb
- Classification: TRANSCRIPTION REGULATOR
- Organism(s): Jannaschia sp. CCS1
- Expression System: Escherichia coli
- Mutation(s): No 
- Deposited: 2008-03-12 Released: 2008-04-01 
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.79 Å
- R-Value Free: 0.243 (Depositor), 0.250 (DCC) 
- R-Value Work: 0.209 (Depositor), 0.210 (DCC) 
- R-Value Observed: 0.211 (Depositor) 
This is version 1.5 of the entry. See complete history. 
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Transcriptional regulator, TetR family | 198 | Jannaschia sp. CCS1 | Mutation(s): 0  Gene Names: YP_510936.1, Jann_2994 |  | |
UniProt | |||||
Find proteins for Q28N01 (Jannaschia sp. (strain CCS1)) Explore Q28N01  Go to UniProtKB:  Q28N01 | |||||
Entity Groups   | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q28N01 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| STE Query on STE | D [auth A], E [auth A] | STEARIC ACID C18 H36 O2 QIQXTHQIDYTFRH-UHFFFAOYSA-N |  | ||
| CL Query on CL | C [auth A], F [auth B] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.79 Å
- R-Value Free:  0.243 (Depositor), 0.250 (DCC) 
- R-Value Work:  0.209 (Depositor), 0.210 (DCC) 
- R-Value Observed: 0.211 (Depositor) 
Diffraction Data: https://doi.org/10.18430/M33CJD
Space Group: P 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 40.283 | α = 99.23 |
| b = 46.044 | β = 100.39 |
| c = 60.761 | γ = 104.79 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| PHENIX | refinement |
| SOLVE | phasing |
| MolProbity | model building |
| SCALA | data scaling |
| PDB_EXTRACT | data extraction |
| MAR345 | data collection |
| MOSFLM | data reduction |
Entry History 
Deposition Data
- Released Date: 2008-04-01  Deposition Author(s): Joint Center for Structural Genomics (JCSG)
Revision History (Full details and data files)
- Version 1.0: 2008-04-01
Type: Initial release - Version 1.1: 2011-07-13
Changes: Advisory, Source and taxonomy, Version format compliance - Version 1.2: 2017-10-25
Changes: Refinement description - Version 1.3: 2019-07-24
Changes: Data collection, Derived calculations, Refinement description - Version 1.4: 2023-02-01
Changes: Database references, Derived calculations - Version 1.5: 2024-11-13
Changes: Data collection, Structure summary
