2Y4V | pdb_00002y4v

CRYSTAL STRUCTURE OF HUMAN CALMODULIN IN COMPLEX WITH A DAP KINASE-1 MUTANT (W305Y) PEPTIDE

Experimental Data Snapshot

  • Method:&nbspX-RAY DIFFRACTION
  • Resolution:&nbsp1.80 Å
  • R-Value Free:&nbsp
    0.238 (Depositor), 0.230 (DCC)&nbsp
  • R-Value Work:&nbsp
    0.229 (Depositor), 0.230 (DCC)&nbsp
  • R-Value Observed:&nbsp
    0.230&nbsp(Depositor)&nbsp

Starting Model: experimental
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wwPDB Validation&nbsp &nbsp3D Report&nbspFull Report


This is version 1.1 of the entry. See complete&nbsphistory.&nbsp


Literature

A Journey Through the Dap Kinase Architecture

De Diego, I.,&nbspKuper, J.,&nbspLehmann, F.,&nbspWilmanns, M.

To be published.

Macromolecules
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(by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
CALMODULIN149Homo sapiensMutation(s): 0&nbsp
UniProt & NIH Common Fund Data Resources
Find proteins for&nbspP0DP23&nbsp(Homo sapiens)
Explore&nbspP0DP23&nbsp
Go to UniProtKB: &nbspP0DP23
PHAROS: &nbspP0DP23
GTEx: &nbspENSG00000198668&nbsp
Entity Groups &nbsp
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP0DP23
Sequence Annotations
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  • Reference Sequence

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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
DEATH-ASSOCIATED PROTEIN KINASE 1,19Homo sapiensMutation(s): 1&nbsp
EC:&nbsp2.7.11.1
UniProt & NIH Common Fund Data Resources
Find proteins for&nbspP53355&nbsp(Homo sapiens)
Explore&nbspP53355&nbsp
Go to UniProtKB: &nbspP53355
PHAROS: &nbspP53355
GTEx: &nbspENSG00000196730&nbsp
Entity Groups &nbsp
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP53355
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method:&nbspX-RAY DIFFRACTION
  • Resolution:&nbsp1.80 Å
  • R-Value Free:&nbsp 0.238 (Depositor), 0.230 (DCC)&nbsp
  • R-Value Work:&nbsp 0.229 (Depositor), 0.230 (DCC)&nbsp
  • R-Value Observed:&nbsp0.230&nbsp(Depositor)&nbsp
Space Group:&nbspC 1 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 65.561α = 90
b = 33.923β = 92.21
c = 74.257γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
XDSdata reduction
SCALAdata scaling
PHASERphasing

Structure Validation

View&nbspFull Validation Report



View more in-depth experimental data
Entry History&nbsp

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2011-12-28
    Type: Initial release
  • Version 1.1: 2023-12-20
    Changes: Data collection, Database references, Derived calculations, Other, Refinement description