1YR5 | pdb_00001yr5

1.7-A structure of calmodulin bound to a peptide from DAP kinase

Experimental Data Snapshot

  • Method:&nbspX-RAY DIFFRACTION
  • Resolution:&nbsp1.70 Å
  • R-Value Free:&nbsp
    0.257 (Depositor), 0.260 (DCC)&nbsp
  • R-Value Work:&nbsp
    0.200 (Depositor), 0.210 (DCC)&nbsp
  • R-Value Observed:&nbsp
    0.203&nbsp(Depositor)&nbsp

Starting Model: experimental
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wwPDB Validation&nbsp &nbsp3D Report&nbspFull Report


This is version 1.4 of the entry. See complete&nbsphistory.&nbsp


Literature

Recognition of human death-associated protein kinases by calmodulin

Kursula, P.,&nbspVahokoski, J.,&nbspWilmanns, M.

To be published.

Macromolecules
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(by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
calmodulin148Homo sapiensMutation(s): 0&nbsp
UniProt & NIH Common Fund Data Resources
Find proteins for&nbspP0DP23&nbsp(Homo sapiens)
Explore&nbspP0DP23&nbsp
Go to UniProtKB: &nbspP0DP23
PHAROS: &nbspP0DP23
GTEx: &nbspENSG00000198668&nbsp
Entity Groups &nbsp
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP0DP23
Sequence Annotations
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  • Reference Sequence

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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
19-mer from Death-associated protein kinase 119N/AMutation(s): 0&nbsp
EC:&nbsp2.7.1.37&nbsp(PDB Primary Data),&nbsp2.7.11.1&nbsp(UniProt)
UniProt & NIH Common Fund Data Resources
Find proteins for&nbspP53355&nbsp(Homo sapiens)
Explore&nbspP53355&nbsp
Go to UniProtKB: &nbspP53355
PHAROS: &nbspP53355
GTEx: &nbspENSG00000196730&nbsp
Entity Groups &nbsp
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP53355
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method:&nbspX-RAY DIFFRACTION
  • Resolution:&nbsp1.70 Å
  • R-Value Free:&nbsp 0.257 (Depositor), 0.260 (DCC)&nbsp
  • R-Value Work:&nbsp 0.200 (Depositor), 0.210 (DCC)&nbsp
  • R-Value Observed:&nbsp0.203&nbsp(Depositor)&nbsp
Space Group:&nbspC 1 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 66.07α = 90
b = 33.71β = 111.16
c = 75.89γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
XDSdata reduction
XDSdata scaling
MOLREPphasing

Structure Validation

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View more in-depth experimental data
Entry History&nbsp

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2006-07-04
    Type: Initial release
  • Version 1.1: 2008-04-30
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Advisory, Version format compliance
  • Version 1.3: 2019-11-20
    Changes: Data collection, Derived calculations
  • Version 1.4: 2023-10-25
    Changes: Data collection, Database references, Derived calculations, Refinement description