GitHub - TAUforPython/BioMedAI: Code for NN, RNN, LSTM, AE, LLM, GNN and other neural networks for biomedicine applications.

Datasets for example: ECG:

AutoML framework challenge:

EDA and AutoML example:

BionMed LMM example:

https://www.pubmedgpt.dev
LLM with attention example:
LMM with fact cheking based on Graph Neural Network and attention

Genetics EDA:

history: https://web.stanford.edu/~sakshamg/portfolio/PCA_genomes/
data storage: https://www.internationalgenome.org/data
simple example

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Name		Name	Last commit message	Last commit date
Latest commit History 326 Commits
test_datasets		test_datasets
AE ECG timeseries prediction.ipynb		AE ECG timeseries prediction.ipynb
AE EEG EDF NN autoencoding.ipynb		AE EEG EDF NN autoencoding.ipynb
AE EEG epilepsy classifier.ipynb		AE EEG epilepsy classifier.ipynb
CNN DWT image diabet retinopathy classification .ipynb		CNN DWT image diabet retinopathy classification .ipynb
CNN ResNet Breast Cancer classification.ipynb		CNN ResNet Breast Cancer classification.ipynb
DWT EEG signal filter.ipynb		DWT EEG signal filter.ipynb
ECG EDF 2 HEADAT.ipynb		ECG EDF 2 HEADAT.ipynb
EDA GENOM population PCA ICA TSNE MDS.ipynb		EDA GENOM population PCA ICA TSNE MDS.ipynb
EEG DFA investigation.ipynb		EEG DFA investigation.ipynb
EEG filtration DWT Fourier.ipynb		EEG filtration DWT Fourier.ipynb
EEG_Fuzzy_Hurst_prediction.ipynb		EEG_Fuzzy_Hurst_prediction.ipynb
GNN ECG timeseries prediction.ipynb		GNN ECG timeseries prediction.ipynb
GNN brain connectome Graph Convolution Network.ipynb		GNN brain connectome Graph Convolution Network.ipynb
GNN model ECG classification.ipynb		GNN model ECG classification.ipynb
LICENSE		LICENSE
LLM GNN fact checking.ipynb		LLM GNN fact checking.ipynb
LLM Graph triplets visualisation.ipynb		LLM Graph triplets visualisation.ipynb
LLM MedBERT NER speech to text.ipynb		LLM MedBERT NER speech to text.ipynb
LLM Mistral Medical Claims Dataset generation.ipynb		LLM Mistral Medical Claims Dataset generation.ipynb
LLM multimodal image2text.ipynb		LLM multimodal image2text.ipynb
LSTM_KAN_4ch_4cl - NASA cognitive.ipynb		LSTM_KAN_4ch_4cl - NASA cognitive.ipynb
ML - autoencoder - anomaly detection.ipynb		ML - autoencoder - anomaly detection.ipynb
ML AutoML ECG classification.ipynb		ML AutoML ECG classification.ipynb
ML ECG Fetal ICA t-SNE.ipynb		ML ECG Fetal ICA t-SNE.ipynb
ML ECG classification.ipynb		ML ECG classification.ipynb
ML SOM DBA ECG timeseries clustering.ipynb		ML SOM DBA ECG timeseries clustering.ipynb
ML TMS XGboost example.ipynb		ML TMS XGboost example.ipynb
ML TMS feature Shapley vectors.ipynb		ML TMS feature Shapley vectors.ipynb
ML TMS pain analysis.ipynb		ML TMS pain analysis.ipynb
ML TMS pain timeseries analysis.ipynb		ML TMS pain timeseries analysis.ipynb
MultiModal LLM MedCLIP SAM Brain.ipynb		MultiModal LLM MedCLIP SAM Brain.ipynb
NN AE EEG epilepsy.ipynb		NN AE EEG epilepsy.ipynb
NN CNN EEG EDF MI class.ipynb		NN CNN EEG EDF MI class.ipynb
NN CNN LSTM EEG DF MI Class.ipynb		NN CNN LSTM EEG DF MI Class.ipynb
NN CNN epilepsy.ipynb		NN CNN epilepsy.ipynb
NN ECG LSTM CNN Attention classification.ipynb		NN ECG LSTM CNN Attention classification.ipynb
NN LSTM ECG classification.ipynb		NN LSTM ECG classification.ipynb
README.md		README.md
RNN ECG forecast timeseries.ipynb		RNN ECG forecast timeseries.ipynb
RNN and RC ECG timeseries prediction.ipynb		RNN and RC ECG timeseries prediction.ipynb
autoencoder_deep_learning_v1_EB.ipynb		autoencoder_deep_learning_v1_EB.ipynb
classifacation_linear_regression.ipynb		classifacation_linear_regression.ipynb
classification_ridge_regression.ipynb		classification_ridge_regression.ipynb
example GNN genomic Graph model.ipynb		example GNN genomic Graph model.ipynb
example ICA for Fetal ECG.ipynb		example ICA for Fetal ECG.ipynb
example LLM GNN fact checking.ipynb		example LLM GNN fact checking.ipynb
example LLM fact checking.ipynb		example LLM fact checking.ipynb
example modelling ECG timeseries.ipynb		example modelling ECG timeseries.ipynb
example time series ECG processing.ipynb		example time series ECG processing.ipynb
gnn_model.ipynb		gnn_model.ipynb
heartbeat_spectrum.ipynb		heartbeat_spectrum.ipynb
neuro.ipynb		neuro.ipynb
пример_автоэнкодер.ipynb		пример_автоэнкодер.ipynb

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